Highlights
In my research, I work towards having easy-to-use software that can be useful to scientists in my field as well as in others. Below is a list of tutorials for packages I developed in parallel with some of my projects.
R-packages
BayesANT - BAYESiAn Nonparametric Taxonomic classifier
BayesANT is a DNA barcoding algorithm to classify DNA sequences within a hierarchical taxonomy, while allowing novel species to be discovered in the test set. See Zito, Rigon, Dunson (2023) MEE.
BNPvegan - Bayesian nonparametric methods for ecologists
BNPvegan is an R-package that implements the methods described in Zito, Rigon, Ovaskainen and Dunson (2023) JASA
ConjugateDP - random number generator for the Stirling-gamma distribution
ConjugateDP is an R-package that implements the random sampler for the Stirling-gamma distribution, which is the conjugate prior for the Dirichlet process precision parameter. See methods described in Zito, Rigon, Dunson (2024) BA
CompressiveNMF - Bayesian non-negative matrix factorization for mutational signature analysis
This repo contains the code to reproduce the empirical results in Zito and Miller (2024+) arXiv
Other projects
Proximity - Pareto optimal proxy metrics
This repo contains the code to reproduce the empirical results in Richarson et al. (2023), arXiv
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655 Huntington Ave, Boston, MA 02115, United States
Email:
azito@hsph.harvard.edu
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